pkg macOS: attempt to clean all libraries.

if any r_path points to a directory outside of bundle
notarization will not fail, however gatekeeper will
not allow the application to open.

• Fix: do not show error if --dirty option used
• Hide output from notarization-history check

(cherry picked from commit 9edf2f50822141749f11b700693e79f8b3b87b4d)